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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
161
DNA accessibility
Date released
100
May, 2020
39
May, 2022
12
February, 2023
7
August, 2020
3
September, 2020
Available data
84
bam
78
bigWig
bed narrowPeak
39
zippedFastqFolder
32
fastq
22
bigBed narrowPeak
12
tsv
1
bed bed3
Organism
161
Homo sapiens
Biosample type
161
primary cell
52
tissue
21
in vitro differentiated cells
19
cell line
Organ
49
epithelium
49
pancreas
Project
112
AMP
49
HPAP
Genome assembly (visualization)
45
hg19
10
GRCh38
Lab
112
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
161 results
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ATAC-seq
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
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