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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
247
Transcription
Date released
76
February, 2023
71
May, 2021
47
May, 2020
26
September, 2018
16
September, 2020
13
July, 2019
5
December, 2019
4
November, 2020
2
February, 2021
2
October, 2018
2
October, 2019
Available data
152
bigWig
151
bam
150
tsv
120
fastq
3
bed bed3+
Organism
264
Homo sapiens
Biosample type
1062
tissue
264
primary cell
141
in vitro differentiated cells
119
cell line
4
stem cell
Organ
93
epithelium
81
pancreas
12
connective tissue
6
kidney
5
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
bone element
1
bone marrow
1
musculature of body
1
pericardium
Project
112
T1D
92
HPAP
60
AMP
Genome assembly (visualization)
153
hg19
150
GRCh38
Lab
114
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
58
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
264 results
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total RNA-seq
pCHi-C
primary cell
monocyte
54
1
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
osteoblast
5
1
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