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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
247
Transcription
10
3D chromatin structure
Date released
76
February, 2023
55
May, 2021
47
May, 2020
26
September, 2018
17
July, 2019
16
September, 2020
5
December, 2019
4
November, 2020
3
October, 2019
3
October, 2022
2
October, 2018
1
February, 2021
1
March, 2020
1
March, 2023
Available data
156
bigWig
150
bam
150
tsv
120
fastq
6
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
Organism
257
Homo sapiens
Biosample type
1053
tissue
257
primary cell
140
in vitro differentiated cells
117
cell line
Organ
100
epithelium
84
pancreas
11
connective tissue
6
blood vessel
6
kidney
6
liver
6
vasculature
4
heart
3
brain
2
artery
2
vein
1
adipose tissue
1
musculature of body
1
pericardium
Project
96
T1D
95
HPAP
65
AMP
1
ITG
Genome assembly (visualization)
161
hg19
151
GRCh38
Lab
98
Kyle Gaulton, UCSD
95
Klaus Kaestner, Upenn
63
AMP-T2D consortium
1
ITG
Audit category:
4
audit script error
4
inconsistent ontology term
BIOSAMPLE
ASSAY
257 results
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total RNA-seq
Hi-C
primary cell
monocyte
54
pancreatic alpha cell
52
1
exocrine cell
39
pancreatic beta cell
21
1
hepatocyte
5
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