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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
10
RRBS
9
Hi-C
2
DNase-seq
1
DNAme array
Assay category
184
Transcription
164
DNA accessibility
58
DNA methylation
37
DNA binding
9
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
57
May, 2020
57
May, 2021
56
September, 2020
45
February, 2021
13
July, 2019
8
January, 2021
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
468
Homo sapiens
Biosample type
714
tissue
468
primary cell
103
in vitro differentiated cells
79
cell line
7
stem cell
Organ
154
epithelium
142
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
314
HPAP
130
AMP
24
T1D
Genome assembly (visualization)
54
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
95
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
9
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bam
BIOSAMPLE
ASSAY
468 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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