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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
97
total RNA-seq
72
ChIP-seq
54
single cell RNA-seq
35
snATAC-seq
17
pCHi-C
10
RRBS
9
Hi-C
6
WGBS
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
152
DNA accessibility
151
Transcription
72
DNA binding
17
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
May, 2022
102
May, 2020
88
February, 2023
57
May, 2021
56
September, 2020
46
February, 2021
17
August, 2017
13
July, 2019
12
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
94
bigWig
84
bam
34
bed narrowPeak
19
zippedFastqFolder
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
418
Homo sapiens
Biosample type
852
tissue
418
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
101
epithelium
74
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
214
AMP
180
HPAP
24
T1D
Genome assembly (visualization)
628
hg19
GRCh38
Lab
180
Klaus Kaestner, Upenn
179
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
18
inconsistent ontology term
assembly!
GRCh38
month_released!
May, 2022
BIOSAMPLE
ASSAY
418 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
WGBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
6
1
6
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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