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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
87
single cell RNA-seq
47
WGBS
32
ChIP-seq
16
pCHi-C
1
DNAme array
1
Hi-C
Assay category
182
Transcription
DNA accessibility
48
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
76
February, 2023
74
May, 2022
56
September, 2020
22
May, 2021
18
February, 2021
12
August, 2017
8
June, 2019
6
October, 2019
2
May, 2020
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
146
fastq
93
zippedFastqFolder
28
bam
6
tsv
2
csv
1
hic
1
tagAlign
Organism
279
Homo sapiens
Biosample type
800
tissue
279
primary cell
116
cell line
97
in vitro differentiated cells
7
stem cell
Organ
122
epithelium
112
pancreas
5
blood vessel
5
vasculature
5
vein
4
connective tissue
3
kidney
2
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
224
HPAP
38
AMP
16
T1D
1
ITG
Genome assembly (visualization)
hg19
460
GRCh38
Lab
224
Klaus Kaestner, Upenn
38
AMP-T2D consortium
16
Kyle Gaulton, UCSD
1
ITG
Audit category:
6
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
279 results
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total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
DNAme array
Hi-C
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
6
exocrine cell
39
pancreatic beta cell
11
16
6
endothelial cell of umbilical vein
5
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