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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
47
WGBS
32
ChIP-seq
29
snATAC-seq
16
pCHi-C
9
DNase-seq
1
DNAme array
1
Hi-C
Assay category
182
Transcription
154
DNA accessibility
48
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
22
May, 2021
18
February, 2021
15
June, 2019
12
August, 2017
8
January, 2021
8
October, 2019
7
August, 2020
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
156
fastq
153
zippedFastqFolder
35
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
433
Homo sapiens
Biosample type
974
tissue
433
primary cell
132
cell line
95
in vitro differentiated cells
7
stem cell
Organ
179
epithelium
161
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
294
HPAP
114
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
536
GRCh38
Lab
294
Klaus Kaestner, Upenn
114
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
12
inconsistent ontology term
assembly!
hg19
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
433 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
snATAC-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
pancreatic alpha cell
29
42
31
6
Langerhans cell
85
21
pancreatic beta cell
16
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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