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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
single cell RNA-seq
67
ATAC-seq
56
snATAC-seq
42
total RNA-seq
20
ChIP-seq
16
pCHi-C
9
DNase-seq
1
DNAme array
1
Hi-C
Assay category
132
DNA accessibility
129
Transcription
20
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
13
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
57
May, 2020
54
May, 2022
51
February, 2023
40
September, 2020
39
February, 2021
22
May, 2021
15
June, 2019
8
January, 2021
8
October, 2019
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
102
fastq
73
zippedFastqFolder
23
bam
12
tsv
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
7
bigWig
2
csv
1
hic
1
tagAlign
Organism
299
Homo sapiens
Biosample type
890
tissue
299
primary cell
98
cell line
96
in vitro differentiated cells
7
stem cell
Organ
179
epithelium
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
172
HPAP
102
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
344
GRCh38
Lab
172
Klaus Kaestner, Upenn
102
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
12
inconsistent ontology term
assembly!
hg19
organ_slims!
pancreas
BIOSAMPLE
ASSAY
299 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
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