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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
258
DNA binding
233
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
29
October, 2019
21
February, 2021
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
613
bigWig
609
bam
382
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
1008
Homo sapiens
Biosample type
2555
tissue
1008
primary cell
603
cell line
391
in vitro differentiated cells
10
stem cell
Organ
380
epithelium
343
pancreas
33
connective tissue
26
kidney
24
vasculature
22
blood vessel
17
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
509
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
582
hg19
491
GRCh38
Lab
474
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
1008 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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