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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
273
DNA accessibility
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
139
May, 2020
134
May, 2022
84
May, 2021
82
February, 2023
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
41
September, 2018
29
July, 2019
21
June, 2019
8
January, 2021
8
October, 2019
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
348
bigWig
347
bam
308
fastq
253
tsv
153
zippedFastqFolder
64
bed narrowPeak
49
bigBed narrowPeak
31
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
780
Homo sapiens
Biosample type
1781
tissue
780
primary cell
111
cell line
88
in vitro differentiated cells
6
stem cell
Organ
310
epithelium
271
pancreas
25
connective tissue
19
kidney
13
vasculature
12
brain
11
blood vessel
9
liver
8
blood
8
bodily fluid
6
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
340
AMP
324
HPAP
115
T1D
1
ITG
Genome assembly (visualization)
359
hg19
313
GRCh38
Lab
338
AMP-T2D consortium
324
Klaus Kaestner, Upenn
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
780 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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