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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ATAC-seq
35
snATAC-seq
28
DNase-seq
1
FAIRE-seq
Assay category
373
Transcription
254
DNA binding
213
DNA accessibility
15
DNA methylation
10
3D chromatin structure
Date released
96
May, 2020
28
February, 2021
21
June, 2019
14
September, 2018
13
May, 2021
8
January, 2021
7
August, 2020
6
February, 2023
5
August, 2017
5
October, 2019
5
September, 2017
3
September, 2020
2
November, 2020
Available data
105
bam
101
bigWig
64
bed narrowPeak
60
fastq
zippedFastqFolder
49
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
24
bed bed3+
6
tsv
1
bed bed3
1
tar
Organism
213
Homo sapiens
Biosample type
468
tissue
213
primary cell
33
in vitro differentiated cells
12
cell line
Organ
50
epithelium
32
pancreas
11
kidney
8
blood
8
bodily fluid
7
connective tissue
6
vasculature
5
blood vessel
5
brain
3
vein
2
heart
2
liver
1
eye
1
musculature of body
Project
168
AMP
37
HPAP
8
T1D
Genome assembly (visualization)
98
hg19
71
GRCh38
Lab
168
AMP-T2D consortium
37
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
213 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
pancreatic alpha cell
13
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