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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
56
snATAC-seq
28
DNase-seq
1
FAIRE-seq
Assay category
425
Transcription
254
DNA binding
85
DNA accessibility
56
DNA methylation
10
3D chromatin structure
Date released
27
February, 2021
21
June, 2019
21
May, 2022
8
January, 2021
5
October, 2019
2
August, 2017
1
November, 2020
Available data
28
fastq
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
27
bigWig
25
bed broadPeak
25
bigBed broadPeak
24
bed bed3+
21
zippedFastqFolder
1
tar
Organism
85
Homo sapiens
Biosample type
208
tissue
85
primary cell
2
cell line
1
in vitro differentiated cells
Organ
18
epithelium
11
kidney
8
blood
8
bodily fluid
6
vasculature
5
blood vessel
5
brain
5
connective tissue
3
vein
2
heart
2
liver
1
eye
1
musculature of body
Project
48
HPAP
29
AMP
8
T1D
Genome assembly (visualization)
24
GRCh38
20
hg19
Lab
48
Klaus Kaestner, Upenn
29
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
85 results
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snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
cardiac fibroblast
2
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