Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
ChIP-seq
148
total RNA-seq
93
single cell RNA-seq
78
ATAC-seq
19
DNase-seq
9
Hi-C
8
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
243
Transcription
227
DNA binding
98
DNA accessibility
9
3D chromatin structure
8
DNA methylation
Target of assay
213
histone
213
histone modification
110
broad histone mark
103
narrow histone mark
10
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
82
May, 2020
72
September, 2018
47
August, 2017
43
April, 2018
42
July, 2018
29
July, 2019
24
October, 2019
19
June, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
February, 2021
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
Available data
558
bigWig
534
bam
263
bed narrowPeak
241
tsv
219
fastq
99
tagAlign
79
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
586
Homo sapiens
Biosample type
1751
tissue
586
primary cell
470
cell line
189
in vitro differentiated cells
3
stem cell
Organ
219
epithelium
180
pancreas
30
vasculature
25
blood vessel
23
connective tissue
21
brain
19
kidney
17
vein
12
liver
5
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
407
AMP
176
T1D
3
HPAP
Genome assembly (visualization)
586
hg19
500
GRCh38
Lab
372
AMP-T2D consortium
211
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
586 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
+ See 64 more…
See all biosamples
Download