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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
47
WGBS
29
snATAC-seq
28
DNase-seq
16
pCHi-C
8
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
254
DNA binding
246
DNA accessibility
56
DNA methylation
6
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
43
April, 2018
42
July, 2018
31
October, 2019
30
June, 2019
29
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
575
bigWig
564
bam
375
fastq
270
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
1003
Homo sapiens
Biosample type
2677
tissue
1003
primary cell
570
cell line
279
in vitro differentiated cells
9
stem cell
Organ
392
epithelium
338
pancreas
35
vasculature
30
blood vessel
28
kidney
26
connective tissue
21
brain
21
vein
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
509
AMP
294
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
582
hg19
500
GRCh38
Lab
474
AMP-T2D consortium
294
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
audit script error
BIOSAMPLE
ASSAY
1003 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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