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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
156
ATAC-seq
123
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
27
DNase-seq
16
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
213
DNA accessibility
184
Transcription
160
DNA binding
49
DNA methylation
10
3D chromatin structure
Target of assay
147
histone
147
histone modification
81
broad histone mark
66
narrow histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
205
May, 2021
139
May, 2020
134
May, 2022
32
October, 2019
30
June, 2019
29
July, 2019
18
September, 2020
8
January, 2021
6
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
4
August, 2021
3
February, 2021
3
October, 2022
2
May, 2019
1
August, 2017
1
March, 2020
1
March, 2023
Available data
575
bigWig
564
bam
fastq
270
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
632
Homo sapiens
Biosample type
2269
tissue
632
primary cell
143
cell line
142
in vitro differentiated cells
5
stem cell
Organ
159
epithelium
88
pancreas
30
vasculature
28
blood vessel
28
kidney
23
connective tissue
22
vein
13
liver
12
brain
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
277
AMP
199
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
367
hg19
278
GRCh38
Lab
242
AMP-T2D consortium
234
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
632 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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