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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ATAC-seq
156
ChIP-seq
123
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
27
DNase-seq
16
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
213
DNA accessibility
184
Transcription
156
DNA binding
49
DNA methylation
10
3D chromatin structure
Target of assay
144
histone
144
histone modification
80
broad histone mark
64
narrow histone mark
13
control
2
RNA binding protein
2
transcription factor
Date released
205
May, 2021
139
May, 2020
134
May, 2022
32
October, 2019
30
June, 2019
29
July, 2019
18
September, 2020
8
January, 2021
6
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
August, 2021
3
February, 2021
3
October, 2022
2
May, 2019
1
August, 2017
1
March, 2020
1
March, 2023
Available data
572
bigWig
560
bam
fastq
267
bed narrowPeak
253
tsv
153
zippedFastqFolder
96
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
31
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
628
Homo sapiens
Biosample type
2080
tissue
628
primary cell
102
cell line
100
in vitro differentiated cells
5
stem cell
Organ
155
epithelium
88
pancreas
30
vasculature
28
blood vessel
28
kidney
23
connective tissue
22
vein
12
brain
9
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
273
AMP
199
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
364
hg19
275
GRCh38
Lab
238
AMP-T2D consortium
234
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
month_released!
August, 2021
BIOSAMPLE
ASSAY
628 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
15
85
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
33
4
1
pancreatic beta cell
13
16
1
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