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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
156
ATAC-seq
123
total RNA-seq
56
single cell RNA-seq
41
WGBS
29
snATAC-seq
22
DNase-seq
16
pCHi-C
7
Hi-C
6
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
208
DNA accessibility
181
Transcription
160
DNA binding
48
DNA methylation
7
3D chromatin structure
Target of assay
147
histone
147
histone modification
81
broad histone mark
66
narrow histone mark
11
control
2
RNA binding protein
2
transcription factor
Date released
205
May, 2021
139
May, 2020
134
May, 2022
32
October, 2019
25
June, 2019
22
July, 2019
18
September, 2020
8
January, 2021
6
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
4
August, 2021
3
February, 2021
3
October, 2022
2
May, 2019
1
August, 2017
1
March, 2020
1
March, 2023
Available data
555
bigWig
547
bam
fastq
259
bed narrowPeak
250
tsv
153
zippedFastqFolder
100
tagAlign
75
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
26
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
620
Homo sapiens
Biosample type
2059
tissue
620
primary cell
143
cell line
142
in vitro differentiated cells
5
stem cell
Organ
159
epithelium
88
pancreas
30
vasculature
28
blood vessel
28
kidney
23
connective tissue
22
vein
13
liver
brain
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
265
AMP
199
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
355
hg19
270
GRCh38
Lab
234
Kyle Gaulton, UCSD
230
AMP-T2D consortium
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
organ_slims!
brain
BIOSAMPLE
ASSAY
620 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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