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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
273
DNA accessibility
250
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
217
histone
217
histone modification
113
broad histone mark
104
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
32
October, 2019
30
June, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
572
bigWig
560
bam
402
fastq
267
bed narrowPeak
253
tsv
153
zippedFastqFolder
96
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
31
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1030
Homo sapiens
Biosample type
2417
tissue
1030
primary cell
529
cell line
237
in vitro differentiated cells
9
stem cell
Organ
392
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
26
connective tissue
22
vein
21
brain
9
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
506
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
583
hg19
497
GRCh38
Lab
471
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
1030 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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