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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
229
ChIP-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
Hi-C
8
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
248
DNA accessibility
229
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
201
histone
201
histone modification
105
broad histone mark
96
narrow histone mark
29
control
2
RNA binding protein
2
transcription factor
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
45
August, 2017
43
April, 2018
42
July, 2018
29
July, 2019
28
October, 2019
9
June, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
August, 2021
3
August, 2018
3
November, 2017
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
572
bigWig
560
bam
402
fastq
267
bed narrowPeak
253
tsv
153
zippedFastqFolder
96
tagAlign
86
bigBed narrowPeak
bed broadPeak
46
bigBed broadPeak
31
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
984
Homo sapiens
Biosample type
2245
tissue
984
primary cell
470
cell line
236
in vitro differentiated cells
9
stem cell
Organ
371
epithelium
341
pancreas
25
vasculature
23
blood vessel
21
connective tissue
19
kidney
18
vein
10
brain
8
blood
8
bodily fluid
7
liver
5
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
460
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
544
hg19
455
GRCh38
Lab
425
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
984 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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