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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
187
ATAC-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
271
DNA accessibility
254
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
101
May, 2022
96
May, 2020
59
August, 2017
46
September, 2018
35
February, 2021
30
June, 2019
30
October, 2019
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
February, 2023
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
May, 2019
November, 2020
1
March, 2020
1
March, 2023
Available data
331
bigWig
321
bam
268
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
31
bed bed3+
12
tsv
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
607
Homo sapiens
Biosample type
1456
tissue
607
primary cell
491
cell line
232
in vitro differentiated cells
7
stem cell
Organ
234
epithelium
191
pancreas
34
vasculature
29
blood vessel
22
kidney
22
vein
18
brain
9
connective tissue
8
blood
8
bodily fluid
8
liver
5
eye
4
musculature of body
3
heart
1
bone element
1
bone marrow
Project
352
AMP
147
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
341
hg19
257
GRCh38
Lab
319
AMP-T2D consortium
147
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
assay_slims!
Transcription
BIOSAMPLE
ASSAY
607 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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