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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ATAC-seq
56
snATAC-seq
27
DNase-seq
1
FAIRE-seq
Assay category
421
Transcription
271
DNA accessibility
254
DNA binding
56
DNA methylation
10
3D chromatin structure
Date released
96
May, 2020
60
May, 2022
28
February, 2021
21
June, 2019
14
September, 2018
13
May, 2021
8
January, 2021
7
August, 2020
6
February, 2023
5
August, 2017
5
October, 2019
5
September, 2017
3
September, 2020
November, 2020
Available data
103
bam
100
bigWig
62
bed narrowPeak
60
fastq
60
zippedFastqFolder
48
bigBed narrowPeak
24
bed broadPeak
24
bigBed broadPeak
23
bed bed3+
6
tsv
1
bed bed3
1
tar
Organism
271
Homo sapiens
Biosample type
468
tissue
271
primary cell
33
in vitro differentiated cells
12
cell line
Organ
89
epithelium
71
pancreas
11
kidney
8
blood
8
bodily fluid
6
vasculature
5
blood vessel
5
brain
5
connective tissue
3
vein
2
heart
2
liver
1
eye
1
musculature of body
Project
166
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
96
hg19
69
GRCh38
Lab
166
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
BIOSAMPLE
ASSAY
271 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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