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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
239
total RNA-seq
187
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
271
DNA accessibility
254
DNA binding
241
Transcription
56
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
101
May, 2022
82
February, 2023
72
September, 2018
59
August, 2017
36
February, 2021
32
October, 2019
30
June, 2019
26
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
Available data
477
bigWig
465
bam
281
fastq
268
bed narrowPeak
156
tsv
101
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
848
Homo sapiens
Biosample type
2508
tissue
848
primary cell
570
cell line
279
in vitro differentiated cells
9
stem cell
Organ
327
epithelium
272
pancreas
36
vasculature
31
blood vessel
28
kidney
22
vein
18
brain
16
connective tissue
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
409
AMP
239
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
487
hg19
401
GRCh38
Lab
374
AMP-T2D consortium
239
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
848 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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