Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
ChIP-seq
15
pCHi-C
9
DNase-seq
1
DNAme array
1
Hi-C
Assay category
182
Transcription
175
DNA accessibility
48
DNA methylation
27
DNA binding
1
3D chromatin structure
Target of assay
20
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
82
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
21
May, 2021
12
August, 2017
11
June, 2019
8
January, 2021
8
October, 2019
7
August, 2020
1
August, 2021
1
March, 2023
1
November, 2018
1
September, 2018
Available data
183
fastq
153
zippedFastqFolder
30
bam
17
bigWig
12
tsv
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
448
Homo sapiens
Biosample type
931
tissue
448
primary cell
100
cell line
90
in vitro differentiated cells
6
stem cell
Organ
177
epithelium
161
pancreas
9
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
vein
3
connective tissue
2
heart
1
bone element
1
bone marrow
1
eye
1
liver
1
musculature of body
Project
321
HPAP
103
AMP
23
T1D
1
ITG
Genome assembly (visualization)
hg19
494
GRCh38
Lab
321
Klaus Kaestner, Upenn
103
AMP-T2D consortium
23
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
assembly!
hg19
BIOSAMPLE
ASSAY
448 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
+ See 31 more…
See all biosamples
Download