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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
ChIP-seq
36
ATAC-seq
25
DNase-seq
1
FAIRE-seq
Assay category
206
DNA binding
62
DNA accessibility
Target of assay
199
histone
199
histone modification
104
broad histone mark
95
narrow histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
46
September, 2018
33
August, 2017
26
June, 2019
19
October, 2019
6
November, 2017
5
September, 2017
3
August, 2021
2
May, 2019
November, 2020
1
February, 2021
Available data
570
bigWig
558
bam
402
fastq
268
bed narrowPeak
249
tsv
153
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
268
Homo sapiens
Biosample type
980
tissue
383
cell line
268
primary cell
119
in vitro differentiated cells
2
stem cell
Organ
100
epithelium
68
pancreas
20
vasculature
17
blood vessel
17
kidney
13
vein
11
brain
5
connective tissue
5
liver
3
eye
2
heart
2
musculature of body
Project
184
AMP
84
T1D
Genome assembly (visualization)
261
hg19
234
GRCh38
Lab
154
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
BIOSAMPLE
ASSAY
268 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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