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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
DNase-seq
21
ChIP-seq
Assay category
24
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
21
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
November, 2020
Available data
570
bigWig
558
bam
402
fastq
268
bed narrowPeak
249
tsv
153
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
45
Homo sapiens
Biosample type
175
tissue
59
cell line
45
primary cell
1
in vitro differentiated cells
Organ
21
epithelium
11
brain
11
vasculature
9
kidney
8
blood vessel
4
connective tissue
4
vein
2
heart
2
liver
1
eye
1
musculature of body
Project
45
AMP
Genome assembly (visualization)
41
GRCh38
38
hg19
Lab
45
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
BIOSAMPLE
ASSAY
45 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
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