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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
238
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
16
pCHi-C
9
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
420
Transcription
271
DNA accessibility
250
DNA binding
55
DNA methylation
9
3D chromatin structure
Target of assay
217
histone
217
histone modification
113
broad histone mark
104
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
32
October, 2019
28
June, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
564
bigWig
553
bam
402
fastq
265
bed narrowPeak
248
tsv
153
zippedFastqFolder
96
tagAlign
84
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
28
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1021
Homo sapiens
Biosample type
2325
tissue
1021
primary cell
264
in vitro differentiated cells
169
cell line
9
stem cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
26
connective tissue
22
vein
21
brain
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
497
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
574
hg19
490
GRCh38
Lab
462
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
1021 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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