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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
4
Hi-C
2
DNase-seq
2
total RNA-seq
1
FAIRE-seq
Assay category
20
DNA binding
4
3D chromatin structure
3
DNA accessibility
2
Transcription
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
21
October, 2019
4
July, 2019
3
November, 2017
June, 2019
1
March, 2020
Available data
25
bam
22
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
29
Homo sapiens
Biosample type
130
tissue
66
cell line
29
primary cell
Organ
380
epithelium
341
pancreas
33
vasculature
29
blood vessel
22
vein
21
connective tissue
19
kidney
16
brain
11
liver
8
blood
8
bodily fluid
4
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
29
AMP
Genome assembly (visualization)
24
hg19
16
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
June, 2019
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
Hi-C
DNase-seq
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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