Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
12
ATAC-seq
7
single cell RNA-seq
3
DNase-seq
2
RRBS
Assay category
25
DNA binding
15
DNA accessibility
7
Transcription
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
25
June, 2019
6
February, 2023
6
July, 2018
4
May, 2020
3
May, 2019
2
July, 2019
2
October, 2019
1
June, 2018
Available data
41
bam
34
bigWig
25
bed narrowPeak
23
bigBed narrowPeak
13
tsv
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
115
in vitro differentiated cells
92
cell line
91
tissue
49
primary cell
1
stem cell
Organ
13
connective tissue
10
epithelium
8
kidney
8
musculature of body
6
heart
5
pancreas
1
liver
1
vasculature
Project
49
AMP
Genome assembly (visualization)
38
hg19
32
GRCh38
Lab
49
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
31
audit script error
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
49 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
gabaergic neuron
3
+ See 11 more…
See all biosamples
Download