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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
Assay category
6
DNA binding
2
DNA accessibility
1
DNA methylation
1
Transcription
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
4
June, 2019
3
May, 2019
1
July, 2018
1
July, 2019
1
October, 2019
Available data
9
bam
6
bed narrowPeak
6
bigWig
5
bigBed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
fastq
1
tsv
Organism
10
Homo sapiens
Biosample type
76
cell line
10
primary cell
5
in vitro differentiated cells
Organ
13
connective tissue
10
epithelium
8
kidney
8
musculature of body
6
heart
5
pancreas
1
liver
1
vasculature
Project
10
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
single cell RNA-seq
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
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