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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
188
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA accessibility
235
DNA binding
184
Transcription
52
DNA methylation
10
3D chromatin structure
Target of assay
193
histone
193
histone modification
101
broad histone mark
92
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
55
June, 2019
47
August, 2017
41
February, 2021
32
October, 2019
15
September, 2018
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
569
bigWig
565
bam
365
fastq
tsv
263
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
774
Homo sapiens
Biosample type
1675
tissue
774
primary cell
530
cell line
257
in vitro differentiated cells
6
stem cell
Organ
269
epithelium
194
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
347
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
332
hg19
240
GRCh38
Lab
318
Klaus Kaestner, Upenn
312
AMP-T2D consortium
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
774 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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