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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
48
snATAC-seq
47
WGBS
39
ChIP-seq
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
204
DNA accessibility
182
Transcription
58
DNA methylation
39
DNA binding
9
3D chromatin structure
Target of assay
29
control
9
histone
9
histone modification
6
broad histone mark
3
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
September, 2020
46
February, 2021
17
August, 2017
13
July, 2019
12
October, 2019
8
June, 2019
6
May, 2021
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
84
bam
59
bigWig
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
5
bed bed3+
5
hic
4
bed broadPeak
4
bed narrowPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
493
Homo sapiens
Biosample type
865
tissue
493
primary cell
185
cell line
81
in vitro differentiated cells
7
stem cell
Organ
181
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
kidney
7
brain
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
Project
314
HPAP
179
AMP
Genome assembly (visualization)
369
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
179
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
31
audit script error
17
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
493 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
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