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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ATAC-seq
186
single cell RNA-seq
151
ChIP-seq
125
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
313
Transcription
266
DNA accessibility
151
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
109
histone
109
histone modification
57
broad histone mark
52
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
55
June, 2019
55
May, 2021
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
September, 2018
34
October, 2019
31
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
349
bigWig
345
bam
324
fastq
165
bed narrowPeak
153
zippedFastqFolder
148
tsv
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
799
Homo sapiens
Biosample type
2720
tissue
799
primary cell
640
cell line
388
in vitro differentiated cells
10
stem cell
Organ
345
epithelium
262
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
474
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
364
hg19
272
GRCh38
Lab
439
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
September, 2018
award.project!
T1D
BIOSAMPLE
ASSAY
799 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
32
12
13
42
31
1
pancreatic beta cell
19
12
13
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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