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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
Assay category
92
DNA binding
Target of assay
193
histone
193
histone modification
101
broad histone mark
92
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
14
August, 2017
11
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
1
May, 2019
Available data
89
bed narrowPeak
89
bigWig
80
bam
47
tagAlign
26
bigBed narrowPeak
17
fastq
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
92
Homo sapiens
Biosample type
305
tissue
92
primary cell
54
in vitro differentiated cells
18
cell line
1
stem cell
Organ
24
epithelium
8
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
52
AMP
40
T1D
Genome assembly (visualization)
89
hg19
79
GRCh38
Lab
50
Kyle Gaulton, UCSD
42
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
primary cell
monocyte
41
CD8-positive, alpha-beta T cell
10
endothelial cell of umbilical vein
6
skeletal muscle myoblast
6
epithelial cell of proximal tubule
4
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