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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
274
DNA binding
257
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
52
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
579
bigWig
575
bam
403
fastq
270
tsv
261
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
79
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1052
Homo sapiens
Biosample type
2553
tissue
1052
primary cell
634
cell line
376
in vitro differentiated cells
8
stem cell
Organ
384
epithelium
342
pancreas
33
connective tissue
31
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
523
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
601
hg19
504
GRCh38
Lab
488
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
1052 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
11
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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