Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
157
ChIP-seq
149
total RNA-seq
48
snATAC-seq
47
WGBS
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
249
DNA accessibility
157
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
118
histone
118
histone modification
60
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
52
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
20
May, 2021
9
November, 2017
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
403
fastq
395
bam
364
bigWig
174
tsv
153
zippedFastqFolder
147
bed narrowPeak
79
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
813
Homo sapiens
Biosample type
2541
tissue
813
primary cell
629
cell line
329
in vitro differentiated cells
8
stem cell
Organ
384
epithelium
342
pancreas
32
connective tissue
31
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
488
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
386
hg19
324
GRCh38
Lab
488
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
assay_title!
DNase-seq
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
813 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
11
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
11
21
16
1
exocrine cell
39
pancreatic acinar cell
9
12
8
4
1
+ See 81 more…
See all biosamples
Download