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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
260
DNA accessibility
253
DNA binding
48
DNA methylation
Target of assay
216
histone
216
histone modification
114
broad histone mark
102
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
39
August, 2017
31
June, 2019
29
October, 2019
18
July, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
604
bam
604
bigWig
404
fastq
290
bed narrowPeak
270
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1014
Homo sapiens
Biosample type
2554
tissue
1014
primary cell
585
cell line
372
in vitro differentiated cells
8
stem cell
Organ
367
epithelium
339
pancreas
31
connective tissue
23
kidney
20
vasculature
19
blood vessel
16
vein
12
musculature of body
10
liver
9
heart
8
blood
8
bodily fluid
6
brain
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
489
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
562
hg19
485
GRCh38
Lab
454
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
assay_title!
Hi-C
files.file_type!
bigBed bedMethyl
bigBed broadPeak
BIOSAMPLE
ASSAY
1014 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
11
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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