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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
DNA binding
249
Transcription
58
DNA methylation
10
3D chromatin structure
Date released
147
May, 2020
101
May, 2022
88
February, 2023
85
May, 2021
40
September, 2018
36
February, 2021
28
July, 2019
24
June, 2019
19
September, 2020
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
267
bam
266
bigWig
187
fastq
170
tsv
101
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
622
Homo sapiens
Biosample type
1696
tissue
622
primary cell
194
in vitro differentiated cells
178
cell line
7
stem cell
Organ
244
epithelium
202
pancreas
23
connective tissue
21
kidney
14
vasculature
11
blood vessel
10
liver
9
brain
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
262
AMP
239
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
281
hg19
229
GRCh38
Lab
260
AMP-T2D consortium
239
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
22
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
assay_title!
single cell RNA-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
622 results
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total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
31
1
monocyte
54
15
1
1
pancreatic beta cell
21
23
16
1
Langerhans cell
48
exocrine cell
39
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