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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
234
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
288
DNA accessibility
274
DNA binding
234
Transcription
49
DNA methylation
6
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
55
June, 2019
54
August, 2017
36
February, 2021
34
October, 2019
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
489
bam
489
bigWig
290
bed narrowPeak
276
fastq
155
tsv
108
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
868
Homo sapiens
Biosample type
2520
tissue
868
primary cell
636
cell line
375
in vitro differentiated cells
8
stem cell
Organ
319
epithelium
268
pancreas
32
vasculature
29
kidney
27
blood vessel
27
connective tissue
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
424
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
495
hg19
416
GRCh38
Lab
389
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
assay_title!
single cell RNA-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
868 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
31
1
pancreatic beta cell
11
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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