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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
247
total RNA-seq
200
ATAC-seq
144
single cell RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
393
Transcription
280
DNA accessibility
274
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
54
August, 2017
48
February, 2021
48
July, 2018
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
565
bigWig
561
bam
366
fastq
290
bed narrowPeak
227
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1032
Homo sapiens
Biosample type
2757
tissue
1032
primary cell
636
cell line
377
in vitro differentiated cells
8
stem cell
Organ
369
epithelium
309
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
511
AMP
324
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
580
hg19
488
GRCh38
Lab
476
AMP-T2D consortium
324
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
month_released!
January, 2021
April, 2018
BIOSAMPLE
ASSAY
1032 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
9
31
1
Langerhans cell
85
48
pancreatic beta cell
11
21
23
9
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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