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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
RRBS
Assay category
48
DNA binding
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
17
narrow histone mark
16
broad histone mark
13
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
54
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
53
bam
53
fastq
41
bigWig
28
bed narrowPeak
18
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
55
Homo sapiens
Biosample type
319
tissue
70
in vitro differentiated cells
55
primary cell
11
cell line
4
stem cell
Organ
37
pancreas
26
epithelium
1
blood vessel
1
vasculature
1
vein
Project
55
AMP
Genome assembly (visualization)
43
hg19
37
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
primary cell
skeletal muscle myoblast
14
2
1
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
endothelial cell of umbilical vein
1
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