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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
246
total RNA-seq
199
ATAC-seq
175
single cell RNA-seq
41
WGBS
31
DNase-seq
29
snATAC-seq
15
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
423
Transcription
274
DNA binding
260
DNA accessibility
52
DNA methylation
10
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
54
August, 2017
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
606
bigWig
601
bam
359
fastq
289
bed narrowPeak
263
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
1034
Homo sapiens
Biosample type
2226
tissue
1034
primary cell
540
cell line
351
in vitro differentiated cells
8
stem cell
Organ
396
epithelium
336
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
bone marrow
1
pericardium
Project
551
AMP
279
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
620
hg19
529
GRCh38
Lab
516
AMP-T2D consortium
279
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
bone marrow
month_released!
February, 2021
BIOSAMPLE
ASSAY
1034 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
11
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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