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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
Hi-C
Assay category
273
Transcription
105
DNA accessibility
47
DNA methylation
Target of assay
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
134
May, 2022
76
February, 2023
67
May, 2021
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
Available data
169
fastq
153
zippedFastqFolder
106
bigWig
102
tsv
96
bam
Organism
441
Homo sapiens
Biosample type
441
primary cell
95
tissue
9
cell line
2
stem cell
Organ
149
epithelium
149
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
321
HPAP
120
T1D
Genome assembly (visualization)
106
GRCh38
96
hg19
Lab
321
Klaus Kaestner, Upenn
120
Kyle Gaulton, UCSD
Audit category:
27
audit script error
5
inconsistent ontology term
award.project!
AMP
assay_title!
Hi-C
target.investigated_as!
histone
BIOSAMPLE
ASSAY
441 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
monocyte
53
1
pancreatic beta cell
11
16
16
exocrine cell
39
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