Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
1
Hi-C
Assay category
177
Transcription
105
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
16
May, 2021
8
January, 2021
7
August, 2020
1
March, 2023
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
1
hic
Organism
346
Homo sapiens
Biosample type
346
primary cell
95
tissue
7
cell line
2
stem cell
Organ
149
epithelium
149
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
321
HPAP
AMP
24
T1D
1
ITG
Genome assembly (visualization)
191
GRCh38
hg19
Lab
321
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
award.project!
AMP
assembly!
hg19
BIOSAMPLE
ASSAY
346 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 17 more…
See all biosamples
Download