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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
56
snATAC-seq
49
ATAC-seq
41
WGBS
16
pCHi-C
4
Hi-C
Assay category
177
Transcription
105
DNA accessibility
84
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
134
May, 2022
100
May, 2021
76
February, 2023
59
September, 2020
39
February, 2021
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
190
bigWig
180
bam
169
fastq
153
zippedFastqFolder
tsv
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
427
Homo sapiens
Biosample type
427
primary cell
97
tissue
9
cell line
2
stem cell
Organ
146
epithelium
146
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
95
GRCh38
87
hg19
Lab
318
Klaus Kaestner, Upenn
108
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
award.project!
AMP
files.file_type!
tsv
BIOSAMPLE
ASSAY
427 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
1
monocyte
84
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
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