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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
155
total RNA-seq
151
ATAC-seq
99
single cell RNA-seq
31
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
256
Transcription
247
DNA binding
191
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
73
September, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
31
October, 2019
28
July, 2019
12
February, 2023
8
January, 2021
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
593
bigWig
577
bam
295
bed narrowPeak
261
tsv
224
fastq
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
729
Homo sapiens
Biosample type
2550
tissue
729
primary cell
579
cell line
357
in vitro differentiated cells
9
stem cell
Organ
233
epithelium
182
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
524
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
615
hg19
523
GRCh38
Lab
492
AMP-T2D consortium
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
target.investigated_as!
control
BIOSAMPLE
ASSAY
729 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
CD8-positive, alpha-beta T cell
30
4
2
1
pancreatic beta cell
7
10
7
12
pancreatic alpha cell
7
10
6
12
pancreatic ductal cell
13
4
4
10
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