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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
178
ATAC-seq
151
total RNA-seq
138
ChIP-seq
48
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
340
Transcription
228
DNA accessibility
138
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
106
histone
106
histone modification
57
broad histone mark
49
narrow histone mark
35
control
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2018
59
September, 2020
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
31
July, 2019
21
October, 2019
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
433
bigWig
429
bam
409
fastq
211
bed narrowPeak
174
tsv
153
zippedFastqFolder
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
775
Homo sapiens
Biosample type
2145
tissue
775
primary cell
377
in vitro differentiated cells
298
cell line
10
stem cell
Organ
345
epithelium
324
pancreas
23
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
450
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
346
hg19
251
GRCh38
Lab
415
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
award.project!
T1D
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
775 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
12
29
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
12
16
21
13
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
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