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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ATAC-seq
187
single cell RNA-seq
151
total RNA-seq
142
ChIP-seq
48
snATAC-seq
47
WGBS
29
DNase-seq
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
340
Transcription
275
DNA accessibility
142
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
115
histone
115
histone modification
62
broad histone mark
53
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
387
bigWig
371
bam
351
fastq
178
bed narrowPeak
174
tsv
153
zippedFastqFolder
90
bigBed narrowPeak
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
4
tagAlign
3
cool
2
csv
1
bed bed3
1
tar
Organism
825
Homo sapiens
Biosample type
2422
tissue
825
primary cell
653
cell line
326
in vitro differentiated cells
10
stem cell
Organ
377
epithelium
305
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
500
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
401
hg19
314
GRCh38
Lab
465
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
award.project!
T1D
month_released!
August, 2017
BIOSAMPLE
ASSAY
825 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
34
12
52
31
1
pancreatic beta cell
22
12
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
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