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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
186
ChIP-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
340
Transcription
280
DNA accessibility
186
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
150
histone
150
histone modification
78
broad histone mark
72
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
424
bigWig
420
bam
400
fastq
205
bed narrowPeak
174
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
875
Homo sapiens
Biosample type
2624
tissue
875
primary cell
394
in vitro differentiated cells
338
cell line
10
stem cell
Organ
400
epithelium
346
pancreas
38
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
550
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
439
hg19
350
GRCh38
Lab
515
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
month_released!
November, 2017
BIOSAMPLE
ASSAY
875 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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