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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
151
ATAC-seq
99
single cell RNA-seq
59
total RNA-seq
26
DNase-seq
9
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
186
DNA binding
178
DNA accessibility
160
Transcription
10
DNA methylation
3
3D chromatin structure
Target of assay
150
histone
150
histone modification
78
broad histone mark
72
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
May, 2021
50
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
24
July, 2019
12
February, 2023
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
412
bam
403
bigWig
231
fastq
200
bed narrowPeak
165
tsv
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
hdf5
1
tar
Organism
538
Homo sapiens
Biosample type
2375
tissue
651
cell line
538
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
538
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
424
hg19
331
GRCh38
Lab
503
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
brain
BIOSAMPLE
ASSAY
538 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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