Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
230
ATAC-seq
106
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
32
DNase-seq
20
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
1
DNAme array
1
FAIRE-seq
Assay category
477
DNA binding
319
DNA accessibility
193
Transcription
52
DNA methylation
14
3D chromatin structure
Target of assay
349
histone
349
histone modification
178
broad histone mark
170
narrow histone mark
69
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
207
May, 2021
134
May, 2022
127
August, 2017
102
May, 2020
92
February, 2023
59
September, 2020
55
June, 2019
47
September, 2018
45
February, 2021
43
December, 2017
39
August, 2021
38
October, 2019
24
February, 2018
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
March, 2020
5
May, 2019
5
November, 2019
5
September, 2017
4
January, 2018
3
October, 2022
2
November, 2020
1
August, 2018
1
March, 2023
1
November, 2018
Available data
900
bam
872
bigWig
550
fastq
427
bed narrowPeak
tsv
153
zippedFastqFolder
140
tagAlign
126
bigBed narrowPeak
62
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
1081
Homo sapiens
Biosample type
1661
tissue
818
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
312
epithelium
241
pancreas
116
connective tissue
35
vasculature
30
kidney
29
blood vessel
24
liver
23
embryo
22
vein
18
brain
12
musculature of body
9
heart
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
654
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
546
hg19
422
GRCh38
4
hg18
Lab
565
AMP-T2D consortium
318
Klaus Kaestner, Upenn
190
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
1
ITG
Audit category:
62
inconsistent ontology term
31
audit script error
Audit category:
50
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
1081 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
+ See 69 more…
in vitro differentiated cells
adipocyte
67
8
1
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 19 more…
See all biosamples
Download